New records of the genus Ramalina (Lecanorales, Ascomycota) in Dagestan with a key to species
УДК 582.293.376+502.4(470.67)
Keywords:
biodiversity, broad-leaved forest, Caucasus, DNA barcoding, HPTLC, lichenized fungi, molecular phylogeny, protected area
Abstract
Based on morphological, chemical and molecular evidences, Ramalina europaea, R. lacera, and R. obtusata are reported for the first time for Dagestan. Ramalina lacera is the first confirmed record for the Russian part of the Caucasus and the second one for Russia. ITS of nuclear ribosomal DNA barcodes for Caucasian specimens of R. lacera and R. obtusata are generated for the first time. Specimen descriptions for firstly revealed species are presented. A key for identification of the 13 known taxa of the genus Ramalinain Dagestan is provided.
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References
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Arup U., Ekman S., Lindblom L., Mattsson J. 1993. High performance thin layer chromatography (HPTLC), an improved technique for screening lichen substances. The Lichenologist 25(1): 61–71. DOI:10.1006/lich.1993.1018
Blanchon D. J., Braggins J. E., Stewart A. 1996. The lichen genus Ramalina in New Zealand. J. Hattori Bot. Lab. 79: 43–98.
Davydov E. A., Yakovchenko L. S. 2023. Ramalina intestiniformis (Ramalinaceae, lichenized Ascomycota) new to Russia. Novosti sistematiki nizshikh rasteniy 57(2): L1–L6. DOI: 10.31111/nsnr/2023.57.2.L1
Gardes M., Bruns T. D. 1993. ITS primers with enhanced specificity for basidiomycetes – application to the identification of mycorrhizae and rusts. Molec. Ecol. 2(2): 113–118. DOI: 10.1111/j.1365-294x.1993.tb00005.x
Garrido-Benavent I., Molins A., Barreno E. 2022. Genetic variation in the symbiont partners in the endangered macrolichen Seirophora villosa (Teloschistaceae: Ascomycota). Bot. J. Linn. Soc. 199(4): 816–829. DOI: 10.1093/ botlinnean/boab100
Gasparyan A., Sipman H. J. M., Lücking R. 2017. Ramalina europaea and R. labiosorediata, two new species of the R. pollinaria group (Ascomycota: Ramalinaceae), and new typifications for Lichen pollinarius and L. squarrosus. The Lichenologist 49(4): 301–319. DOI: 10.1017/s0024282917000226
Gumboski E., Sionara S., da Silveira R. 2014. Extending the distribution of Ramalina lacera (With.) J. R. Laundon (Ramalinaceae, lichen forming Ascomycota): first record from eastern South America. Check List 10(1): 195–198. DOI: 10.15560/10.1.195
Исмаилов А. Б. Новые для Дагестана виды макролишайников // Бот. журн., 2018. Т. 103, № 6. С. 755–759. DOI: 10.1134/S0006813618060054
Исмаилов А. Б. Лишайники высоко¬горных буковых лесов Республики Дагестан // Новости сист. низш. раст., 2020. T. 54, № 2. С. 413–427. DOI: 10.31111/nsnr/2020.54.2.413
Исмаилов А. Б., Урбанавичюс Г. П. 2013. Дополнения к лихенофлоре Дагестана // Бот. журн., 2013. Т. 98, № 11. С. 1421–1426.
Ismailov A., Urbanavichus G., Vondrák J., Pouska V. 2017. An old-growth forest at the Caspian Sea coast is similar in epiphytic lichens to lowland deciduous forests in Central Europe. Herzogia 30(1): 103–125. DOI: 10.13158/ heia.28.1.2015.10438
Катаева О. А. Ramalina sekika Asahina (Ramalinaceae) – новый для России вид с Дальнего Востока // Новости сист. низш. раст., 2014. Т. 48. С. 256–263. DOI:10.31111/nsnr/2014.48.256
Katoh K., Rozewicki J., Yamada K. D. 2019. MAFFT online service: multiple sequence alignment, interactive sequence choice and visualization. Briefings in Bioinformatics 20: 1160–1166. DOI: 10.1093/bib/bbx108
Kistenich S., Timdal E., Bendiksby M., Ekman S. 2018. Molecular systematics and character evolution in the lichen family Ramalinaceae (Ascomycota: Lecanorales). Taxon 67(5): 871–904. DOI: 10.12705/675.1
Красная книга Республики Крым. Растения, водоросли и грибы. Симферополь: Ариал, 2015. 480 с.
Криворотов С. Б. Ли¬шайники и лишайниковые группировки Северо-Западного Кавказа и Предкавказья (Флористический и эко¬логический анализ). Краснодар: Кубан. гос. ун-т, 1997. 201 с.
Krog H. 1990. New Ramalina species from Porto Santo, Madeira. The Lichenologist 22(3): 241–247. DOI: 10.1017/ S0024282990000263
Krog H., Østhagen H. 1980. The genus Ramalina in the Canary Islands. Nordic J. Bot. 27: 255–296.
Kumar S., Stecher G., Li M., Knyaz C., Tamura K. 2018. MEGA X: Molecular Evolutionary Genetics Analysis across computing platforms. Mol. Biol. Evol. 35: 1547–1549. DOI: 10.1093/molbev/msy096
Lücking R., Hodkinson B. P., Leavitt S. D. 2017. The 2016 classification of lichenized fungi in the Ascomycota and Basidiomycota – Approaching one thousand genera. The Bryologist 119(4): 361–416. DOI: 10.1639/0007-2745- 119.4.361
Marthinsen G., Rui S., Timdal E. 2019. OLICH: A reference library of DNA barcodes for Nordic lichens. Biodiversity Data Journal 7: e36252. DOI: 10.3897/BDJ.7.e36252
Nimis P. L. 2016. The Lichens of Italy. A Second Annotated Catalogue. Trieste: EUT. 739 pp.
Pérez-Vargas I., Pérez-Ortega S. 2014. A new endemic Ramalina species from the Canary Islands (Ascomycota, Lecanorales). Phytotaxa 159(4): 269–278. DOI: 10.11646/phytotaxa.159.4.3
Sérusiaux E., van den Boom P., Ertz D. 2010. A two-gene phylogeny shows the lichen genus Niebla (Lecanorales) is endemic to the New World and does not occur in Macaronesia nor in the Mediterranean basin. Fungal Biology 114(7): 528–537. DOI: 10.1016/j.funbio.2010.04.002
Smith C. W., Aptroot A., Coppins B. J., Fletcher A., Gilbert O. L., James P.W., Wolseley P. A. (eds.). 2009. The Lichens of Great Britain and Ireland. London: British Lichen Society. 1046 pp.
Sparrius L. B., Aptroot A., Sipman H.J.M., Pérez-Vargas I., Matos P., Gerlach A., Vervoort M. 2017. Estimating the population size of the endemic lichens Anzia centrifuga (Parmeliaceae) and Ramalina species (Ramalinaceae) on Porto Santo (Madeira archipelago). The Bryologist 120(3): 293–301. DOI: 10.1639/0007-2745-120.3.293
Trifinopoulos J., Nguyen L. T., von Haeseler A., Minh B. Q. 2016. W-IQ-TREE: a fast online phylogenetic tool for maximum likelihood analysis. Nucleic Acids Research 44(W1): W232–W235. DOI: 10.1093/nar/gkw256
Урбанавичюс Г. П. Список лихенофлоры России. СПб.: Наука, 2010. 194 с.
Urbanavichus G., Ismailov A. 2013. The lichen flora of Gunib plateau in the Inner-mountain Dagestan (NE Caucasus, Russia). Turk J. Bot. 37(4): 753–768. DOI: 10.3906/bot-1205-4
Urbanavichus G., Ismailov A. 2016. New records of lichens and lichenicolous fungi from Dagestan, Russia. Folia Cryptogammica Estonica 53: 65–69. DOI: 10.12697/fce.2016.53.08
Urbanavichus G., Urbanavichene I. 2014. An inventory of the lichen flora of Lagonaki Highland (NW Caucasus, Russia). Herzogia 27(2): 285–319. DOI: 10.13158/heia.27.2.2014.285
Vondrák J., Svoboda S., Malíček J., Palice Z., Kocourková J., Knudsen K., Mayrhofer H., Thüs H., Schultz M., Košnar J., Hofmeister J. 2022. From Cinderella to Princess: an exceptional hotspot of lichen diversity in a long-inhabited Central-European landscape. Preslia 94: 143–181. DOI: 10.23855/preslia.2022.143
Walker T. R., Pystina T. N. 2005. The first record of Ramalina obtusata in the Komi Republic, north-eastern European Russia. Graphis Scripta 17: 48–51.
White T. J., Bruns T., Lee S., Taylor J. 1990. Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In: M. A. Innis, D. H. Gelfand, J. J. Sninsky, T. J. White (eds.). PCR Protocols: a guide to methods and applications. New York: Academic Press. Pp. 315–322.
Arup U., Ekman S., Lindblom L., Mattsson J. 1993. High performance thin layer chromatography (HPTLC), an improved technique for screening lichen substances. The Lichenologist 25(1): 61–71. DOI:10.1006/lich.1993.1018
Blanchon D. J., Braggins J. E., Stewart A. 1996. The lichen genus Ramalina in New Zealand. J. Hattori Bot. Lab. 79: 43–98.
Davydov E. A., Yakovchenko L. S. 2023. Ramalina intestiniformis (Ramalinaceae, lichenized Ascomycota) new to Russia. Novosti sistematiki nizshikh rasteniy 57(2): L1–L6. DOI: 10.31111/nsnr/2023.57.2.L1
Gardes M., Bruns T. D. 1993. ITS primers with enhanced specificity for basidiomycetes – application to the identification of mycorrhizae and rusts. Molec. Ecol. 2(2): 113–118. DOI: 10.1111/j.1365-294x.1993.tb00005.x
Garrido-Benavent I., Molins A., Barreno E. 2022. Genetic variation in the symbiont partners in the endangered macrolichen Seirophora villosa (Teloschistaceae: Ascomycota). Bot. J. Linn. Soc. 199(4): 816–829. DOI: 10.1093/ botlinnean/boab100
Gasparyan A., Sipman H. J. M., Lücking R. 2017. Ramalina europaea and R. labiosorediata, two new species of the R. pollinaria group (Ascomycota: Ramalinaceae), and new typifications for Lichen pollinarius and L. squarrosus. The Lichenologist 49(4): 301–319. DOI: 10.1017/s0024282917000226
Gumboski E., Sionara S., da Silveira R. 2014. Extending the distribution of Ramalina lacera (With.) J. R. Laundon (Ramalinaceae, lichen forming Ascomycota): first record from eastern South America. Check List 10(1): 195–198. DOI: 10.15560/10.1.195
Исмаилов А. Б. Новые для Дагестана виды макролишайников // Бот. журн., 2018. Т. 103, № 6. С. 755–759. DOI: 10.1134/S0006813618060054
Исмаилов А. Б. Лишайники высоко¬горных буковых лесов Республики Дагестан // Новости сист. низш. раст., 2020. T. 54, № 2. С. 413–427. DOI: 10.31111/nsnr/2020.54.2.413
Исмаилов А. Б., Урбанавичюс Г. П. 2013. Дополнения к лихенофлоре Дагестана // Бот. журн., 2013. Т. 98, № 11. С. 1421–1426.
Ismailov A., Urbanavichus G., Vondrák J., Pouska V. 2017. An old-growth forest at the Caspian Sea coast is similar in epiphytic lichens to lowland deciduous forests in Central Europe. Herzogia 30(1): 103–125. DOI: 10.13158/ heia.28.1.2015.10438
Катаева О. А. Ramalina sekika Asahina (Ramalinaceae) – новый для России вид с Дальнего Востока // Новости сист. низш. раст., 2014. Т. 48. С. 256–263. DOI:10.31111/nsnr/2014.48.256
Katoh K., Rozewicki J., Yamada K. D. 2019. MAFFT online service: multiple sequence alignment, interactive sequence choice and visualization. Briefings in Bioinformatics 20: 1160–1166. DOI: 10.1093/bib/bbx108
Kistenich S., Timdal E., Bendiksby M., Ekman S. 2018. Molecular systematics and character evolution in the lichen family Ramalinaceae (Ascomycota: Lecanorales). Taxon 67(5): 871–904. DOI: 10.12705/675.1
Красная книга Республики Крым. Растения, водоросли и грибы. Симферополь: Ариал, 2015. 480 с.
Криворотов С. Б. Ли¬шайники и лишайниковые группировки Северо-Западного Кавказа и Предкавказья (Флористический и эко¬логический анализ). Краснодар: Кубан. гос. ун-т, 1997. 201 с.
Krog H. 1990. New Ramalina species from Porto Santo, Madeira. The Lichenologist 22(3): 241–247. DOI: 10.1017/ S0024282990000263
Krog H., Østhagen H. 1980. The genus Ramalina in the Canary Islands. Nordic J. Bot. 27: 255–296.
Kumar S., Stecher G., Li M., Knyaz C., Tamura K. 2018. MEGA X: Molecular Evolutionary Genetics Analysis across computing platforms. Mol. Biol. Evol. 35: 1547–1549. DOI: 10.1093/molbev/msy096
Lücking R., Hodkinson B. P., Leavitt S. D. 2017. The 2016 classification of lichenized fungi in the Ascomycota and Basidiomycota – Approaching one thousand genera. The Bryologist 119(4): 361–416. DOI: 10.1639/0007-2745- 119.4.361
Marthinsen G., Rui S., Timdal E. 2019. OLICH: A reference library of DNA barcodes for Nordic lichens. Biodiversity Data Journal 7: e36252. DOI: 10.3897/BDJ.7.e36252
Nimis P. L. 2016. The Lichens of Italy. A Second Annotated Catalogue. Trieste: EUT. 739 pp.
Pérez-Vargas I., Pérez-Ortega S. 2014. A new endemic Ramalina species from the Canary Islands (Ascomycota, Lecanorales). Phytotaxa 159(4): 269–278. DOI: 10.11646/phytotaxa.159.4.3
Sérusiaux E., van den Boom P., Ertz D. 2010. A two-gene phylogeny shows the lichen genus Niebla (Lecanorales) is endemic to the New World and does not occur in Macaronesia nor in the Mediterranean basin. Fungal Biology 114(7): 528–537. DOI: 10.1016/j.funbio.2010.04.002
Smith C. W., Aptroot A., Coppins B. J., Fletcher A., Gilbert O. L., James P.W., Wolseley P. A. (eds.). 2009. The Lichens of Great Britain and Ireland. London: British Lichen Society. 1046 pp.
Sparrius L. B., Aptroot A., Sipman H.J.M., Pérez-Vargas I., Matos P., Gerlach A., Vervoort M. 2017. Estimating the population size of the endemic lichens Anzia centrifuga (Parmeliaceae) and Ramalina species (Ramalinaceae) on Porto Santo (Madeira archipelago). The Bryologist 120(3): 293–301. DOI: 10.1639/0007-2745-120.3.293
Trifinopoulos J., Nguyen L. T., von Haeseler A., Minh B. Q. 2016. W-IQ-TREE: a fast online phylogenetic tool for maximum likelihood analysis. Nucleic Acids Research 44(W1): W232–W235. DOI: 10.1093/nar/gkw256
Урбанавичюс Г. П. Список лихенофлоры России. СПб.: Наука, 2010. 194 с.
Urbanavichus G., Ismailov A. 2013. The lichen flora of Gunib plateau in the Inner-mountain Dagestan (NE Caucasus, Russia). Turk J. Bot. 37(4): 753–768. DOI: 10.3906/bot-1205-4
Urbanavichus G., Ismailov A. 2016. New records of lichens and lichenicolous fungi from Dagestan, Russia. Folia Cryptogammica Estonica 53: 65–69. DOI: 10.12697/fce.2016.53.08
Urbanavichus G., Urbanavichene I. 2014. An inventory of the lichen flora of Lagonaki Highland (NW Caucasus, Russia). Herzogia 27(2): 285–319. DOI: 10.13158/heia.27.2.2014.285
Vondrák J., Svoboda S., Malíček J., Palice Z., Kocourková J., Knudsen K., Mayrhofer H., Thüs H., Schultz M., Košnar J., Hofmeister J. 2022. From Cinderella to Princess: an exceptional hotspot of lichen diversity in a long-inhabited Central-European landscape. Preslia 94: 143–181. DOI: 10.23855/preslia.2022.143
Walker T. R., Pystina T. N. 2005. The first record of Ramalina obtusata in the Komi Republic, north-eastern European Russia. Graphis Scripta 17: 48–51.
White T. J., Bruns T., Lee S., Taylor J. 1990. Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In: M. A. Innis, D. H. Gelfand, J. J. Sninsky, T. J. White (eds.). PCR Protocols: a guide to methods and applications. New York: Academic Press. Pp. 315–322.
Published
2023-12-20
How to Cite
Ismailov A. B., Volobuev S. V., Kataeva O. A. New records of the genus Ramalina (Lecanorales, Ascomycota) in Dagestan with a key to species // Turczaninowia, 2023. Vol. 26, № 4. P. 31-38 DOI: 10.14258/turczaninowia.26.4.7. URL: http://turczaninowia.asu.ru/article/view/14469.
Section
Science articles
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